Bayesian model selection with BAMM: effects of the model prior on the inferred number of diversification shifts

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/135965/1/mee312626.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/135965/2/mee312626_am.pd

MIMO free-space optical communication employing subcarrier intensity modulation in atmospheric turbulence channels

In this paper, we analyse the error performance of transmitter/receiver array free-space optical (FSO) communication system employing binary phase shift keying (BPSK) subcarrier intensity modulation (SIM) in clear but turbulent atmospheric channel. Subcarrier modulation is employed to eliminate the need for adaptive threshold detector. Direct detection is employed at the receiver and each subcarrier is subsequently demodulated coherently. The effect of irradiance fading is mitigated with an array of lasers and photodetectors. The received signals are linearly combined using the optimal maximum ratio combining (MRC), the equal gain combining (EGC) and the selection combining (SelC). The bit error rate (BER) equations are derived considering additive white Gaussian noise and log normal intensity fluctuations. This work is part of the EU COST actions and EU projects

The use of synchrotron edge topography to study polytype nearest neighbour relationships in SiC

A brief review of the phenomenon of polytypism is presented and its prolific abundance in Silicon Carbide discussed. An attempt has been made to emphasise modern developments in understanding this unique behaviour. The properties of Synchrotron Radiation are shown to be ideally suited to studies of polytypes in various materials and in particular the coalescence of polytypes in SiC. It is shown that with complex multipolytypic crystals the technique of edge topography allows the spatial extent of disorder to be determined and, from the superposition of Laue type reflections, neighbourhood relationships between polytypes can be deduced. Finer features have now been observed with the advent of second generation synchrotrons, the resolution available enabling the regions between adjoining polytypes to be examined more closely. It is shown that Long Period Polytypes and One Dimensionally Disordered layers often found in association with regions of high defect density are common features at polytype boundaries. An idealised configuration termed a "polytype sandwich" is presented as a model for the structure of SiC grown by the modified Lely technique. The frequency of common sandwich edge profiles are classified and some general trends of polytype neighbourism are summarised

Susceptibility of provenances and families of Pinus maximinoi and Pinus tecunumanii to frost in South Africa

The future of South Africa’s most important pine species, Pinus patula, is threatened by the pitch canker fungus, Fusarium circinatum. Pinus maximinoi and P. tecunumanii represent two subtropical species that provide an alternative to planting P. patula on the warmer sites of South Africa. Extending the planting range of P. tecunumanii and P. maximinoi to include higher and colder altitude sites will reduce the area planted to P. patula and the risk of F. circinatum. During 2007 progeny trials of P. tecunumanii and P. maximinoi were planted on a sub-tropical and sub-temperate site. Shortly after the establishment of these trials, unusually cold weather conditions were experienced across South Africa (-3 C at the sub-temperate site) resulting in severe mortality. This provided the opportunity to assess the variation in survival as a measure of frost tolerance within these two species to determine whether it could be improved upon through selection. Results indicated that the variation in survival was under genetic control in P. tecunumanii (h(0,1) 2 = 0.16, hL 2 = 0.27) and P. maximinoi (h(0,1) 2 = 0.11, hL 2 = 0.23) at the sub-temperate site. Correlations in provenance ranking for survival across sites were high for both species. Moderate correlations in family survival for P. tecunumanii (r = 0.52) were found at the two sites. Improvements in cold tolerance can thus be made in both species extending their planting range to include greater areas planted to P. patula thereby limiting the risk of F. circinatum.http://link.springer.com/journal/1105

Finite Temperature Systems of Brane-Antibrane on a Torus

In order to study the thermodynamic properties of brane-antibrane systems in the toroidal background, we compute the finite temperature effective potential of tachyon T in this system on the basis of boundary string field theory. We first consider the case that all the radii of the target space torus are about the string scale. If the Dp-antiDp pair is extended in all the non-compact directions, the sign of the coefficient of |T|^2 term of the potential changes slightly below the Hagedorn temperature. This means that a phase transition occurs near the Hagedorn temperature. On the other hand, if the Dp-antiDp pair is not extended in all the non-compact directions, the coefficient is kept negative, and thus a phase transition does not occur. Secondly, we consider the case that some of the radii of the target space torus are much larger than the string scale and investigate the behavior of the potential for each value of the radii and the total energy. If the Dp-antiDp pair is extended in all the non-compact directions, a phase transition occurs for large enough total energy.Comment: 23 pages, 3 figures, minor errors corrected, version to appear in JHE

Tolerance of Pinus patula x Pinus tecunumanii, and other pine hybrids, to Fusarium circinatum in greenhouse trails

The field survival of Pinus patula seedlings in South Africa is frequently below acceptable standards. From numerous studies it has been determined that this is largely due to the pitch canker fungus, Fusarium circinatum. Other commercial pines, such as P. elliottii and P. taeda, show good tolerance to this pathogen and better survival, but have inferior wood properties and do not grow as well as P. patula on many sites in the summer rainfall regions of South Africa. There is, thus, an urgent need to improve the tolerance of P. patula to F. circinatum. Operational experience indicates that when P. patula is hybridized with tolerant species, such as P. tecunumanii and P. oocarpa, survival is greatly improved on the warmer sites of South Africa. Field studies on young trees suggest that this is due to the improved tolerance of these hybrids to F. circinatum. In order to test the tolerance of a number of pine hybrids, the pure species representing the hybrid parents, as well as individual families of P. patula x P. tecunumanii, a series of greenhouse screening trials were conducted during 2008 and 2009. The results indicated that species range in tolerance and hybrids, between P. patula and these species, are intermediate in tolerance to F. circinatum. Within P. patula x P. tecunumanii, large family variation exists when pollen from the high elevation source of P. tecunumanii is used. The results of these studies illustrate the importance of developing pine hybrid breeding programs to overcome the susceptibility of our pure species to pathogens such as F. circinatum.The members of the Tree Protection Co-operative Programme (TPCP) and the THRIP initiative of the Department of Trade and Industry (DTI).http://www.springerlink.com/content/102971

Selection of Pinus spp. in South Africa for tolerance to infection by the pitch canker fungus

The increasing threats from pests and diseases demand that the South African forest industry explores options to deploy alternative pine species in plantation development. This is especially true for species, such as Pinus patula Schiede and Deppe ex Schltdl. and Cham., which are highly susceptible to the pitch canker fungus Fusarium circinatum. Losses due to F. circinatum have been confined mostly to nurseries and at field establishment resulting in a significant cost to the industry. Although, the fungus has not as yet resulted in stem and branch infections on established P. patula in South Africa, it has caused pitch canker on other, more susceptible species such as P. radiata D. Don., and P. greggii Engelm. ex Parl. As alternatives to P. patula, on the warmer and cooler sites in South Africa, families of P. elliottii Engelm var. elliottii, P. tecunumanii (Schw.) Eguiluz and Perry, P. maximinoi H. E. Moore and P. pseudostrobus Lindl. were screened for tolerance to infection by F. circinatum in greenhouse studies. Seedlings were wounded and inoculated with spores of F. circinatum. Lesion development following inoculation was used to differentiate the levels of tolerance between families. The results showed that P. maximinoi, P. pseudostrobus, and the low elevation variety of P. tecunumanii are highly tolerant to infection with very little family variation. The narrow sense heritability estimates for these species were less than 0.06. In contrast, P. elliottii showed good tolerance with some family variation and a heritability of 0.22, while the high elevation source of P. tecunumanii showed a high degree of family variation and a heritability of 0.59. These results provide the industry with valuable information on pine species tolerant to F. circinatum that could be used as alternatives to P. patula in South Africa.Members of the Tree Protection Co-operative Programme (TPCP) and members of the Technology and Human Resources for Industry Programme (THRIP), an initiative of the Department of Trade and Industry (DTI).http://www.springerlink.com/content/102971/nf201

Symmetries and Elasticity of Nematic Gels

A nematic liquid-crystal gel is a macroscopically homogeneous elastic medium with the rotational symmetry of a nematic liquid crystal. In this paper, we develop a general approach to the study of these gels that incorporates all underlying symmetries. After reviewing traditional elasticity and clarifying the role of broken rotational symmetries in both the reference space of points in the undistorted medium and the target space into which these points are mapped, we explore the unusual properties of nematic gels from a number of perspectives. We show how symmetries of nematic gels formed via spontaneous symmetry breaking from an isotropic gel enforce soft elastic response characterized by the vanishing of a shear modulus and the vanishing of stress up to a critical value of strain along certain directions. We also study the phase transition from isotropic to nematic gels. In addition to being fully consistent with approaches to nematic gels based on rubber elasticity, our description has the important advantages of being independent of a microscopic model, of emphasizing and clarifying the role of broken symmetries in determining elastic response, and of permitting easy incorporation of spatial variations, thermal fluctuations, and gel heterogeneity, thereby allowing a full statistical-mechanical treatment of these novel materials.Comment: 21 pages, 4 eps figure

Inflation and Brane Gases

We investigate a new way of realizing a period of cosmological inflation in the context of brane gas cosmology. It is argued that a gas of co-dimension one branes, out of thermal equilibrium with the rest of the matter, has an equation of state which can - after stabilization of the dilaton - lead to power-law inflation of the bulk. The most promising implementation of this mechanism might be in Type IIB superstring theory, with inflation of the three large spatial dimensions triggered by ``stabilized embedded 2-branes''. Possible applications and problems with this proposal are discussed.Comment: 7 pages, uses REVTeX, version to appear in Phys. Rev.